LOC_Os01g51754.1 (AMY3, ATAMY3, LOC_Os01g51754)


Aliases : AMY3, ATAMY3, LOC_Os01g51754

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g51754.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene38425.t1 AMY2, ATAMY2,... alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02250 AMY3, ATAMY3 alpha amylase 0.02 OrthoFinder output from all 47 species
Mp1g24800.1 AMY1, ATAMY1 alpha amylase 0.02 OrthoFinder output from all 47 species
Ore_g00848 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02338 AMY2, ATAMY2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g30556 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 197 450
IPR012850 A-amylase_bs_C 501 558
No external refs found!