LOC_Os01g51154.1 (LOC_Os01g51154)

Aliases : LOC_Os01g51154

Description : transcription factor (MYB-related)

Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g51154.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00193000	ATTRB1, TRB1,...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
AT3G49850	ATTRB3, TBP2, TRB3	telomere repeat binding factor 3	0.02	OrthoFinder output from all 47 species
Als_g21441	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Als_g30526	ATTRB1, TRB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g13254	ATTRB1, TRB1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g03190	ATTRB1, TRB1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g72176	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Ceric.09G087300.1	ATTRB1, TRB1,...	not classified & original description: pacid=50587750...	0.03	OrthoFinder output from all 47 species
Dcu_g03767	ATTRB1, TRB1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g44110	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Lfl_g36360	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Pir_g08695	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Pnu_g03424	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Sam_g39657	No alias	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Zm00001e012521_P001	TRFL3, Zm00001e012521	transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species
Zm00001e016829_P002	ATTRB1, TRB1,...	PRC2-recruiting factor (TRB). transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species
Zm00001e020011_P001	Zm00001e020011	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0070531	BRCA1-A complex	IEP	HCCA
CC	GO:0070552	BRISC complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	5	56
IPR005818	Histone_H1/H5_H15	116	174

External Links

No external refs found!

LOC_Os01g51154.1 (LOC_Os01g51154)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation