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  5. LOC_Os01g48580.1

LOC_Os01g48580.1 (UBC25, PFU1, LOC_Os01g48580)


Aliases : UBC25, PFU1, LOC_Os01g48580

Description : Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana (sp|q9luq5|ubc25_arath : 313.0)


Gene families : OG0001231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g48580.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AT1G53025 No alias Ubiquitin-conjugating enzyme family protein 0.03 OrthoFinder output from all 47 species
Gb_01294 PFU2, UBC23 ubiquitin-conjugating E2 protein (PHO2) 0.03 OrthoFinder output from all 47 species
MA_10239595g0010 PFU2, UBC23 Probable ubiquitin-conjugating enzyme E2 23... 0.02 OrthoFinder output from all 47 species
Mp3g21400.1 PFU2, UBC23 Probable ubiquitin-conjugating enzyme E2 23... 0.02 OrthoFinder output from all 47 species
Pir_g24311 UBC24, PHO2, ATUBC24 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 246 380
No external refs found!