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  5. LOC_Os01g46340.1

LOC_Os01g46340.1 (LOC_Os01g46340)


Aliases : LOC_Os01g46340

Description : regulatory protein (IPGA) of cortical microtubule organisation


Gene families : OG0001103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g46340.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00127710 evm_27.TU.AmTr_v1... Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00045p00113980 evm_27.TU.AmTr_v1... Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00155p00024540 CHUP1,... Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00868p00010810 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G07120 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 OrthoFinder output from all 47 species
Ala_g25523 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22592 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16074 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04082 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24662 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g36486 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017698001 No alias Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01021189001 No alias Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01024701001 No alias Protein CHUP1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_08802 CHUP1 regulatory protein (IPGA) of cortical microtubule organisation 0.04 OrthoFinder output from all 47 species
Gb_35748 CHUP1 regulatory protein (IPGA) of cortical microtubule organisation 0.04 OrthoFinder output from all 47 species
MA_211108g0010 CHUP1 regulatory protein (IPGA) of cortical microtubule organisation 0.02 OrthoFinder output from all 47 species
MA_5633g0010 CHUP1 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp7g03540.1 CHUP1 motility factor (CHUP) 0.03 OrthoFinder output from all 47 species
Msp_g38296 CHUP1 motility factor *(CHUP) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06491 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g069560.3.1 CHUP1, Solyc02g069560 Protein CHUP1, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g09352 CHUP1 motility factor *(CHUP) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39670 CHUP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e020303_P001 Zm00001e020303 regulatory protein (IPGA) of cortical microtubule organisation 0.04 OrthoFinder output from all 47 species
Zm00001e032492_P004 Zm00001e032492 regulatory protein (IPGA) of cortical microtubule organisation 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010274 hydrotropism IEP HCCA
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!