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  5. LOC_Os01g43040.1

LOC_Os01g43040.1 (RPD1, LOC_Os01g43040)


Aliases : RPD1, LOC_Os01g43040

Description : Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q689d6|rpd1_arath : 315.0)


Gene families : OG0004302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g43040.1

Target Alias Description ECC score Gene Family Method Actions
AT1G06440 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.02 OrthoFinder output from all 47 species
Ceric.35G059500.1 RPD1, Ceric.35G059500 not classified & original description: pacid=50580998... 0.03 OrthoFinder output from all 47 species
Ehy_g08476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19831 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_22225 RPD1 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Lfl_g26057 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15269 RPD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03187 RPD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0151.g023415 RPD1 not classified & original description: CDS=1-1575 0.03 OrthoFinder output from all 47 species
Solyc02g081530.1.1 Solyc02g081530 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e034752_P001 RPD1, Zm00001e034752 Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019211 phosphatase activator activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 299 647
IPR013057 AA_transpt_TM 60 148
No external refs found!