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  5. LOC_Os01g41190.2

LOC_Os01g41190.2 (LOC_Os01g41190)


Aliases : LOC_Os01g41190

Description : component CASC3 of RNA quality control Exon Junction complex


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g41190.2

Target Alias Description ECC score Gene Family Method Actions
AT1G15280 No alias CASC3/Barentsz eIF4AIII binding 0.04 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g14440 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g75996 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.26G046100.1 Ceric.26G046100 component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dde_g08014 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g07360 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc12g042990.3.1 Solyc12g042990 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 136 237
No external refs found!