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  5. LOC_Os01g25510.1

LOC_Os01g25510.1 (AMY1, ATAMY1, LOC_Os01g25510)


Aliases : AMY1, ATAMY1, LOC_Os01g25510

Description : Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica (sp|q0jmv4|amyc1_orysj : 116.0)


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g25510.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Adi_g020886 AMY2, ATAMY2 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16401 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g28422 AMY3, ATAMY3 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38425.t1 AMY2, ATAMY2,... alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40723.t1 AMY3, ATAMY3,... alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22213 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.12G070100.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50600969... 0.03 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39307 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g42728 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g43320 AMY2, ATAMY2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.05 OrthoFinder output from all 47 species
LOC_Os09g28400.1 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Len_g01238 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24732 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_217935g0010 AMY1, ATAMY1 alpha amylase 0.04 OrthoFinder output from all 47 species
MA_9120657g0010 AMY2, ATAMY2 Probable alpha-amylase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g37571 AMY2, ATAMY2 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12491 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18959 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009946_P001 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Zm00001e015947_P002 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!