LOC_Os01g25065.1 (ATPB, PB, LOC_Os01g25065)

Aliases : ATPB, PB, LOC_Os01g25065

Description : ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. japonica (sp|p12085|atpb_orysj : 556.0)

Gene families : OG0000973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000973_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g25065.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00606p00000120	ATPB, PB,...	ATP synthase subunit beta, chloroplastic OS=Amborella trichopoda	0.13	OrthoFinder output from all 47 species
ATCG00480	ATPB, PB	ATP synthase subunit beta	0.23	OrthoFinder output from all 47 species
Aev_g10806	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.38	OrthoFinder output from all 47 species
Als_g08694	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Aob_g06682	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.2	OrthoFinder output from all 47 species
Ceric.02G014100.1	ATPB, PB, Ceric.02G014100	not classified & original description: pacid=50586216...	0.15	OrthoFinder output from all 47 species
Ceric.03G022700.1	ATPB, PB, Ceric.03G022700	subunit beta of peripheral CF1 subcomplex of ATP...	0.17	OrthoFinder output from all 47 species
Ceric.09G048700.1	ATPB, PB, Ceric.09G048700	subunit beta of peripheral CF1 subcomplex of ATP...	0.14	OrthoFinder output from all 47 species
Ceric.1Z141700.1	ATPB, PB, Ceric.1Z141700	subunit beta of peripheral CF1 subcomplex of ATP...	0.16	OrthoFinder output from all 47 species
Ceric.1Z162000.1	ATPB, PB, Ceric.1Z162000	not classified & original description: pacid=50596930...	0.02	OrthoFinder output from all 47 species
Ceric.32G035500.1	ATPB, PB, Ceric.32G035500	not classified & original description: pacid=50597326...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001376.3	No alias	ATP synthase subunit beta, mitochondrial...	0.02	OrthoFinder output from all 47 species
Cre17.g698000	No alias	Cellular respiration.oxidative phosphorylation.ATP...	0.03	OrthoFinder output from all 47 species
Dcu_g20874	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.15	OrthoFinder output from all 47 species
GSVIVT01006210001	ATPB, PB	ATP synthase subunit beta, chloroplastic OS=Vitis vinifera	0.13	OrthoFinder output from all 47 species
Gb_00175	ATPB, PB	ATP synthase subunit beta, chloroplastic OS=Picea abies...	0.18	OrthoFinder output from all 47 species
Gb_11358	ATPB, PB	subunit epsilon of peripheral CF1 subcomplex of ATP...	0.17	OrthoFinder output from all 47 species
Gb_22349	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP synthase complex	0.18	OrthoFinder output from all 47 species
Gb_37463	ATPB, PB	subunit epsilon of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
LOC_Os06g39740.1	ATPB, PB, LOC_Os06g39740	subunit beta of peripheral CF1 subcomplex of ATP synthase complex	0.14	OrthoFinder output from all 47 species
Lfl_g05507	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.29	OrthoFinder output from all 47 species
Ore_g00399	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.22	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010854	ATPB, PB	not classified & original description: CDS=1-264	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0228.g026385	ATPB, PB	not classified & original description: CDS=1-342	0.13	OrthoFinder output from all 47 species
Sam_g02504	No alias	subunit beta of peripheral CF1 subcomplex of ATP...	0.2	OrthoFinder output from all 47 species
Smo236855	ATPB, PB	ATP synthase subunit beta, chloroplastic OS=Psilotum nudum	0.08	OrthoFinder output from all 47 species
Solyc00g500064.1.1	ATPB, PB, Solyc00g500064	subunit beta of peripheral CF1 subcomplex of ATP synthase complex	0.03	OrthoFinder output from all 47 species
Solyc07g021180.3.1	ATPB, PB, Solyc07g021180	ATP synthase subunit beta, chloroplastic OS=Nicotiana...	0.04	OrthoFinder output from all 47 species
Spa_g51445	ATPB, PB	subunit beta of peripheral CF1 subcomplex of ATP...	0.06	OrthoFinder output from all 47 species
Zm00001e042082_P001	ATPB, PB, Zm00001e042082	ATP synthase subunit beta, chloroplastic OS=Zea mays...	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034220	monoatomic ion transmembrane transport	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	IEA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098655	monoatomic cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902600	proton transmembrane transport	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
BP	GO:0015977	carbon fixation	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004100	ATPase_F1/V1/A1_a/bsu_N	23	96
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd	153	317

External Links

No external refs found!

LOC_Os01g25065.1 (ATPB, PB, LOC_Os01g25065)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation