Aliases : LOC_Os01g10050
Description : pre-mRNA splicing regulator (DDX5)
Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G14610 | No alias | DEAD box RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
Adi_g020035 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g024667 | No alias | regulatory RNA helicase *(RH20/RH30) of virus... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g057398 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g14759 | ATDRH1, DRH1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene63146.t1 | ATDRH1, DRH1,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g10365 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.21G038500.1 | Ceric.21G038500 | regulatory RNA helicase *(RH20/RH30) of virus... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g10539 | ATDRH1, DRH1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g41933 | No alias | regulatory RNA helicase *(RH20/RH30) of virus... | 0.03 | OrthoFinder output from all 47 species | |
Gb_10302 | ATDRH1, DRH1 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Len_g51090 | No alias | regulatory RNA helicase *(RH20/RH30) of virus... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g09160 | ATDRH1, DRH1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g08678 | ATDRH1, DRH1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g19068 | No alias | regulatory RNA helicase *(RH20/RH30) of virus... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g12189 | ATDRH1, DRH1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pp3c1_24600V3.1 | Pp3c1_24600 | DEA(D/H)-box RNA helicase family protein | 0.01 | OrthoFinder output from all 47 species | |
Sam_g29066 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g112350.4.1 | Solyc03g112350 | pre-mRNA splicing regulator (DDX5) | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g044860.3.1 | Solyc12g044860 | DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e016546_P001 | Zm00001e016546 | pre-mRNA splicing regulator (DDX5) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020972_P005 | ATDRH1, DRH1,... | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
CC | GO:0030880 | RNA polymerase complex | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No external refs found! |