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  5. LOC_Os01g08340.1

LOC_Os01g08340.1 (LOC_Os01g08340)


Aliases : LOC_Os01g08340

Description : RING-H2-class E3 ligase


Gene families : OG0001028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g08340.1

Target Alias Description ECC score Gene Family Method Actions
AT4G32600 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g022001 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056482 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01905 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g008139 No alias E3 ubiquitin ligase *(DRR1) & original description: CDS=62-1507 0.02 OrthoFinder output from all 47 species
GSVIVT01035722001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Len_g18922 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56731 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05520 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08010 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014146 No alias E3 ubiquitin ligase *(DRR1) & original description: CDS=167-1540 0.02 OrthoFinder output from all 47 species
Zm00001e016704_P001 Zm00001e016704 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 331 372
No external refs found!