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  5. MA_749465g0010

MA_749465g0010


Description : no hits & (original description: none)


Gene families : OG0006392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_749465g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00117140 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder output from all 47 species
Aop_g25303 No alias component *(RRP43) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species
Cba_g03113 No alias component *(RRP43) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species
Ceric.10G033100.1 Ceric.10G033100 component *(RRP43) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g09717 No alias component *(RRP43) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os11g20689.1 LOC_Os11g20689 component RRP43 of exosome EXO9 core complex 0.03 OrthoFinder output from all 47 species
Pp3c19_14820V3.1 Pp3c19_14820 3\-5\-exoribonuclease family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011215 No alias component *(RRP43) of exosome EXO9 core complex &... 0.02 OrthoFinder output from all 47 species
Sam_g10277 No alias component *(RRP43) of exosome EXO9 core complex &... 0.03 OrthoFinder output from all 47 species
Solyc06g075390.4.1 Solyc06g075390 component RRP43 of exosome EXO9 core complex 0.04 OrthoFinder output from all 47 species
Tin_g12088 No alias component *(RRP43) of exosome EXO9 core complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e003688_P003 Zm00001e003688 component RRP43 of exosome EXO9 core complex 0.02 OrthoFinder output from all 47 species
Zm00001e021990_P001 Zm00001e021990 component RRP43 of exosome EXO9 core complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 42 100
No external refs found!