1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_72639g0010

MA_72639g0010 (MBD10)


Aliases : MBD10

Description : methylation reader (MBD10-11)


Gene families : OG0000919 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000919_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_72639g0010

Target Alias Description ECC score Gene Family Method Actions
Adi_g060317 MBD10 methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110470 MBD10 methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21478 No alias methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g69630 No alias methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G023800.1 MBD11, ATMBD11,... methylation reader *(MBD10-11) & original description:... 0.05 OrthoFinder output from all 47 species
Len_g00492 No alias methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g11754 No alias methylation reader *(MBD10-11) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g15405 No alias methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19997 MBD10 methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11641 No alias methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04437 No alias methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18337 MBD10 methylation reader *(MBD10-11) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12685 MBD11, ATMBD11 methylation reader *(MBD10-11) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004995_P005 MBD11, ATMBD11,... methylation reader (MBD10-11) 0.04 OrthoFinder output from all 47 species
Zm00001e017958_P001 MBD11, ATMBD11,... methylation reader (MBD10-11) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 26 91
No external refs found!