- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : BRCA1, ATBRCA1
Description : Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana (sp|q8rxd4|brca1_arath : 89.0)
Gene families : OG0001776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001776_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_66542g0010 | |
| Cluster | HCCA: Cluster_79 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00067p00180030 | BRCA1, ATBRCA1,... | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00092p00067800 | BRCA1, ATBRCA1,... | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.07 | OrthoFinder output from all 47 species | |
| AT1G04020 | BARD1, ROW1, ATBARD1 | breast cancer associated RING 1 | 0.15 | OrthoFinder output from all 47 species | |
| Adi_g017491 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g16524 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.11 | OrthoFinder output from all 47 species | |
| Aop_g08732 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.1 | OrthoFinder output from all 47 species | |
| Aop_g10443 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.1 | OrthoFinder output from all 47 species | |
| Aspi01Gene06963.t1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.1 | OrthoFinder output from all 47 species | |
| Aspi01Gene29593.t1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.06G016800.1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.16G078600.1 | BARD1, ROW1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.19G066200.1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.30G011100.1 | BARD1, ROW1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.12 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020537.14 | No alias | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.04 | OrthoFinder output from all 47 species | |
| Cre07.g334650 | No alias | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g10577 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g15330 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g10242 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.15 | OrthoFinder output from all 47 species | |
| Dcu_g42186 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_00493 | BRCA1, ATBRCA1 | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.17 | OrthoFinder output from all 47 species | |
| LOC_Os04g43300.1 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os05g43610.1 | BRCA1, ATBRCA1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.07 | OrthoFinder output from all 47 species | |
| Len_g03899 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g11293 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g00070.1 | BRCA1, ATBRCA1 | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.17 | OrthoFinder output from all 47 species | |
| Msp_g15829 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g12141 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g26771 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.11 | OrthoFinder output from all 47 species | |
| Ppi_g16822 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007705 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.12 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0092.g018874 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.06 | OrthoFinder output from all 47 species | |
| Smo414577 | BARD1, ROW1, ATBARD1 | Protein biosynthesis.translation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g008210.4.1 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.11 | OrthoFinder output from all 47 species | |
| Spa_g04261 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.1 | OrthoFinder output from all 47 species | |
| Tin_g03296 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g32798 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e007590_P001 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e014997_P002 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e032102_P001 | BRCA1, ATBRCA1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
| MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006270 | DNA replication initiation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007017 | microtubule-based process | IEP | HCCA |
| BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
| MF | GO:0008017 | microtubule binding | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |