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  5. MA_63122g0010

MA_63122g0010


Description : Polygalacturonase OS=Actinidia deliciosa (sp|p35336|pglr_actde : 246.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 169.4)


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_63122g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G02460 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G10640 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g32139 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01536 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46867.t1 Aspi01Gene46867 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14013 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11602 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g37611 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43003 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g44374 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g20917 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04883 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22868 No alias polygalacturonase *(PGX1-like) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01038447001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_12008 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_33196 No alias Polygalacturonase OS=Prunus persica... 0.02 OrthoFinder output from all 47 species
LOC_Os01g19170.1 LOC_Os01g19170 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g55532 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g10720.1 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.04 OrthoFinder output from all 47 species
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g06863 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42249 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo111266 ADPG2, PGAZAT Polygalacturonase OS=Chamaecyparis obtusa 0.04 OrthoFinder output from all 47 species
Smo78038 No alias Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
Solyc01g079130.2.1 Solyc01g079130 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Zm00001e013553_P001 Zm00001e013553 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e026240_P001 Zm00001e026240 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e032294_P001 Zm00001e032294 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 87 165
IPR000743 Glyco_hydro_28 170 334
No external refs found!