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  5. MA_60620g0010

MA_60620g0010


Description : pre-60S ribosomal subunit assembly factor (NSA1)


Gene families : OG0005136 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_60620g0010

Target Alias Description ECC score Gene Family Method Actions
Aop_g22268 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.04 OrthoFinder output from all 47 species
Cba_g25634 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.40 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre17.g718650 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01013111001 No alias No description available 0.07 OrthoFinder output from all 47 species
LOC_Os07g32350.1 LOC_Os07g32350 pre-60S ribosomal subunit assembly factor (NSA1) 0.03 OrthoFinder output from all 47 species
Lfl_g18925 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.03 OrthoFinder output from all 47 species
Pir_g09584 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.03 OrthoFinder output from all 47 species
Sam_g10518 No alias pre-60S ribosomal subunit assembly factor *(NSA1) &... 0.02 OrthoFinder output from all 47 species
Solyc08g008160.4.1 Solyc08g008160 pre-60S ribosomal subunit assembly factor (NSA1) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!