- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : ATPUP11, PUP11
Description : organic cation transporter (PUP)
Gene families : OG0000721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000721_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_580238g0010 | |
| Cluster | HCCA: Cluster_63 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00068p00197770 | PUP4, ATPUP4,... | Solute transport.carrier-mediated transport.DMT... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00135p00104240 | PUP1, ATPUP1,... | Solute transport.carrier-mediated transport.DMT... | 0.02 | OrthoFinder output from all 47 species | |
| AT4G18190 | PUP6, ATPUP6 | purine permease 6 | 0.02 | OrthoFinder output from all 47 species | |
| AT4G18205 | No alias | Nucleotide-sugar transporter family protein | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene39612.t1 | ATPUP3, PUP3,... | organic cation transporter *(PUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene60644.t1 | ATPUP3, PUP3,... | organic cation transporter *(PUP) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene67831.t1 | ATPUP3, PUP3,... | organic cation transporter *(PUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G095800.1 | PUP1, ATPUP1,... | organic cation transporter *(PUP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G055300.1 | PUP1, ATPUP1,... | organic cation transporter *(PUP) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g22363 | ATPUP3, PUP3 | organic cation transporter *(PUP) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Gb_04001 | ATPUP3, PUP3 | organic cation transporter (PUP) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_32685 | ATPUP3, PUP3 | organic cation transporter (PUP) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g46380.1 | ATPUP11, PUP11,... | organic cation transporter (PUP) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g14465 | PUP1, ATPUP1 | organic cation transporter *(PUP) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g38639 | ATPUP11, PUP11 | organic cation transporter *(PUP) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g19845 | ATPUP3, PUP3 | organic cation transporter *(PUP) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g10233 | ATPUP5, PUP5 | organic cation transporter *(PUP) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo236291 | ATPUP5, PUP5 | Solute transport.carrier-mediated transport.DMT... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g005820.3.1 | Solyc03g005820 | organic cation transporter (PUP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g074880.2.1 | ATPUP3, PUP3,... | organic cation transporter (PUP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g035420.1.1 | ATPUP3, PUP3,... | organic cation transporter (PUP) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g077370.4.1 | ATPUP11, PUP11,... | organic cation transporter (PUP) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| MF | GO:0010181 | FMN binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |