MA_283144g0010


Description : Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana (sp|q9ls25|pp420_arath : 656.0)


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_283144g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.1 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.1 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g08632 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Als_g01055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08499 EMB2750 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.07 OrthoFinder output from all 47 species
Dac_g15325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07226 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g11670.1 SVR7, LOC_Os03g11670 Pentatricopeptide repeat-containing protein ATP4... 0.03 OrthoFinder output from all 47 species
Len_g02383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.05 OrthoFinder output from all 47 species
Msp_g09352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g12890 SVR7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g15542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11215 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo10825 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Smo442013 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.06 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder output from all 47 species
Spa_g04939 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.04 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004512 inositol-3-phosphate synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006020 inositol metabolic process IEP HCCA
BP GO:0006021 inositol biosynthetic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 390 419
IPR002885 Pentatricopeptide_repeat 482 539
IPR002885 Pentatricopeptide_repeat 279 309
IPR002885 Pentatricopeptide_repeat 422 468
IPR002885 Pentatricopeptide_repeat 317 365
IPR002885 Pentatricopeptide_repeat 213 258
No external refs found!