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  5. MA_20580g0050

MA_20580g0050 (OPCL1)


Aliases : OPCL1

Description : OPC-8:CoA synthetase


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_20580g0050

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene45697.t1 OPCL1, Aspi01Gene45697 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ore_g27380 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37295 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025886 OPCL1 not classified & original description: CDS=370-2175 0.02 OrthoFinder output from all 47 species
Solyc08g076300.3.1 Solyc08g076300 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g20791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28398 AT4CL2, 4CL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 456 531
IPR000873 AMP-dep_Synth/Lig_com 43 447
No external refs found!