1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_169053g0010

MA_169053g0010


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana (sp|q9asp6|hnrpq_arath : 109.0)


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_169053g0010
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00004p00121730 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g075764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089100 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g25318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0182.g056457 No alias not classified & original description: CDS=29-2320 0.04 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.04 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.07 OrthoFinder output from all 47 species
Ceric.20G007500.1 Ceric.20G007500 not classified & original description: pacid=50566839... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.20 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g00874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g12296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02777 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39004 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023957 No alias not classified & original description: CDS=113-2587 0.02 OrthoFinder output from all 47 species
Sam_g35273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g15243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e007365_P001 Zm00001e007365 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 280 346
IPR000504 RRM_dom 377 442
IPR000504 RRM_dom 200 268
No external refs found!