MA_13933g0010 (AGL13)

Aliases : AGL13

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_13933g0010
Cluster	HCCA: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00254030	SHP2, AGL5,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00025p00244880	AGL61, DIA,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00071p00193200	STK, AGL11,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT2G45650	AGL6	AGAMOUS-like 6	0.03	OrthoFinder output from all 47 species
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
Aev_g20345	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g19697	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15812.t1	AGL6, Aspi01Gene15812	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene68989.t2	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene72145.t2	AGL30, Aspi01Gene72145	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g29409	AGL6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G094900.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Dac_g08553	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g32401	AGL10, CAL1, CAL	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008139001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01018450001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01038474001	AGL16	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
Gb_15398	PI	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Gb_41550	No alias	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os02g45770.1	AGL6, LOC_Os02g45770	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os03g08754.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g56388	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_100760g0010	AGL8, FUL	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_130755g0010	AGL10, CAL1, CAL	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
MA_15122g0010	AGL16	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_20180g0010	AGL24	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_43075g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
MA_491676g0010	AGL6	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
MA_951956g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Ore_g28516	AGL66	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g36418	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g093960.3.1	AGL6, Solyc01g093960	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Solyc01g150167.1.1	AGL17, Solyc01g150167	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.01	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc02g071730.4.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc02g089210.4.1	AGL7, AP1, Solyc02g089210	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc04g005320.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc10g044965.1.1	AGL21, Solyc10g044965	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Spa_g01718	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g47543	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g54311	AGL9, SEP3	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000846_P003	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e003667_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e006950_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e038716_P004	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	102	164
IPR002100	TF_MADSbox	12	59

External Links

No external refs found!

MA_13933g0010 (AGL13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation