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  5. MA_108607g0010

MA_108607g0010


Description : component RPL6 of LSU proteome component


Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_108607g0010
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder output from all 47 species
AT1G18540 No alias Ribosomal protein L6 family protein 0.4 OrthoFinder output from all 47 species
AT1G74050 No alias Ribosomal protein L6 family protein 0.21 OrthoFinder output from all 47 species
AT1G74060 No alias Ribosomal protein L6 family protein 0.18 OrthoFinder output from all 47 species
Adi_g022078 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Adi_g030322 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g103996 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g112035 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g02805 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g05526 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Als_g24717 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g27038 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g30795 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g18157 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g06856 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Aop_g23018 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g53417 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene09131.t1 Aspi01Gene09131 component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene59148.t1 Aspi01Gene59148 component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0313.g064223 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cba_g22295 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g25951 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cba_g30780 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.29G021300.1 Ceric.29G021300 component *(eL6) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.29G025100.1 Ceric.29G025100 component *(eL6) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 OrthoFinder output from all 47 species
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Dac_g11635 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g11900 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g27846 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g34737 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Dde_g28378 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g05475 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g29528 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Gb_01604 No alias component RPL6 of LSU proteome component 0.2 OrthoFinder output from all 47 species
LOC_Os02g37862.1 LOC_Os02g37862 component RPL6 of LSU proteome component 0.29 OrthoFinder output from all 47 species
LOC_Os04g39700.1 LOC_Os04g39700 component RPL6 of LSU proteome component 0.33 OrthoFinder output from all 47 species
Len_g32251 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Len_g33706 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Lfl_g12580 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g28288 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g31990 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Msp_g07934 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Msp_g36122 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g06470 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g51766 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pir_g62336 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Pp3c14_4160V3.1 Pp3c14_4160 Ribosomal protein L6 family protein 0.15 OrthoFinder output from all 47 species
Pp3c1_24300V3.1 Pp3c1_24300 Ribosomal protein L6 family protein 0.07 OrthoFinder output from all 47 species
Pp3c2_13300V3.1 Pp3c2_13300 Ribosomal protein L6 family protein 0.11 OrthoFinder output from all 47 species
Ppi_g11150 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g12976 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g24337 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g28246 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011154 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016460 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g06914 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Sam_g08583 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.2 OrthoFinder output from all 47 species
Sam_g08584 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g19281 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g26138 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g31628 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g33761 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g35672 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g39991 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g45675 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g47556 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g47654 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder output from all 47 species
Solyc04g014720.4.1 Solyc04g014720 component RPL6 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Solyc05g054070.4.1 Solyc05g054070 component RPL6 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc11g012110.2.1 Solyc11g012110 component RPL6 of LSU proteome component 0.27 OrthoFinder output from all 47 species
Spa_g16223 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g44572 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g01561 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Tin_g36505 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e014979_P001 Zm00001e014979 component RPL6 of LSU proteome component 0.24 OrthoFinder output from all 47 species
Zm00001e022840_P001 Zm00001e022840 component RPL6 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Zm00001e022841_P001 Zm00001e022841 component RPL6 of LSU proteome component 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005568 Ribosomal_L6_N 2 57
IPR000915 60S_ribosomal_L6E 125 231
No external refs found!