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  5. MA_10554g0010

MA_10554g0010


Description : component MPE1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10554g0010

Target Alias Description ECC score Gene Family Method Actions
AT4G17410 No alias DWNN domain, a CCHC-type zinc finger 0.04 OrthoFinder output from all 47 species
Adi_g013405 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Adi_g060172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20650 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24993.t2 Aspi01Gene24993 component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Azfi_s0466.g072795 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Dcu_g06496 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Dcu_g12334 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g13745 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Nbi_g35870 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g26290 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g32323 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g07536 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Pnu_g18993 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ppi_g05925 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025829 Zn_knuckle_CX2CX3GHX4C 212 232
IPR014891 DWNN_domain 24 80
No external refs found!