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Aliases : HVT1, ATVT-1
Description : DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana (sp|f4iny4|hvt1_arath : 553.0)
Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00032p00104970 | HVT1, ATVT-1,... | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AT1G06670 | NIH | nuclear DEIH-boxhelicase | 0.06 | OrthoFinder output from all 47 species | |
| AT2G30800 | HVT1, ATVT-1 | helicase in vascular tissue and tapetum | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g089369 | HVT1, ATVT-1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g04487 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g20539 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene12313.t1 | HVT1, ATVT-1,... | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g16527 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.16G053600.1 | HVT1, ATVT-1,... | not classified & original description: pacid=50590253... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g12090 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g02016 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12887 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01020822001 | HVT1, ATVT-1 | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| Gb_13707 | HVT1, ATVT-1 | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g01923 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g02414 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26937 | HVT1, ATVT-1 | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g44296 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g16610 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g044930.3.1 | HVT1, ATVT-1,... | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g10294 | HVT1, ATVT-1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g19921 | HVT1, ATVT-1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028983_P004 | HVT1, ATVT-1,... | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004386 | helicase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| MF | GO:0005049 | nuclear export signal receptor activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005685 | U1 snRNP | IEP | HCCA |
| BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |