MA_10431872g0010

Description : component SMG8 of SMG1C protein kinase complex

Gene families : OG0006988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006988_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10431872g0010
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
Adi_g104723	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Aev_g09311	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Ala_g21960	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Aop_g13987	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Cba_g04742	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Ceric.29G051800.1	Ceric.29G051800	component *(SMG8) of SMG1C protein kinase complex &...	0.05	OrthoFinder output from all 47 species
Dcu_g04993	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Dde_g26418	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g17378	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Gb_15944	No alias	component SMG8 of SMG1C protein kinase complex	0.02	OrthoFinder output from all 47 species
LOC_Os02g57780.1	LOC_Os02g57780	component SMG8 of SMG1C protein kinase complex	0.02	OrthoFinder output from all 47 species
Len_g35816	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.06	OrthoFinder output from all 47 species
Lfl_g06757	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
MA_10431872g0020	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g19091	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Ore_g37236	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.04	OrthoFinder output from all 47 species
Pir_g63906	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Pnu_g33052	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Sam_g29230	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.02	OrthoFinder output from all 47 species
Spa_g07639	No alias	component *(SMG8) of SMG1C protein kinase complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e023552_P003	Zm00001e023552	component SMG8 of SMG1C protein kinase complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019354	SMG8/SMG9	371	519
IPR019354	SMG8/SMG9	522	597

External Links

No external refs found!

MA_10431872g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation