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  5. MA_10430596g0010

MA_10430596g0010


Description : component SF3B3 of splicing factor 3B complex


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430596g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171130 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
AT3G55220 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.03 OrthoFinder output from all 47 species
Ala_g02677 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aop_g07573 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0213.g058260 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ceric.26G015800.1 Ceric.26G015800 component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.5 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dcu_g03168 No alias component *(SF3B3) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g04480.1 LOC_Os02g04480 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Len_g07976 No alias component *(SF3B3) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Nbi_g05900 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Pir_g12238 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g04707 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Sam_g07166 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Spa_g06875 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Tin_g06130 No alias component *(SF3B3) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e013611_P001 Zm00001e013611 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 859 1178
No external refs found!