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  5. MA_10428163g0010

MA_10428163g0010 (EDF2, AtRAV2, TEM2,...)


Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10428163g0010
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Ceric.20G072500.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
MA_10432625g0010 EDF3 transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_140243g0010 TEM1, EDF1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Pir_g49278 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Solyc12g098460.2.1 Solyc12g098460 AP2/ERF and B3 domain-containing transcription factor... 0.03 OrthoFinder output from all 47 species
Zm00001e023240_P001 NGA3, Zm00001e023240 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 294 389
IPR001471 AP2/ERF_dom 140 187
No external refs found!