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Description : component Symplekin/Pta1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex
Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10426054g0010 | |
| Cluster | HCCA: Cluster_241 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G27595 | No alias | CONTAINS InterPro DOMAIN/s: Symplekin tight junction... | 0.05 | OrthoFinder output from all 47 species | |
| AT5G01400 | ESP4 | HEAT repeat-containing protein | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g081403 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g04252 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g23718 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g63126 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08267 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g22132 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0003.g007850 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010125 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g36378 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G050700.1 | Ceric.01G050700 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G019100.1 | ESP4, Ceric.12G019100 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g01061 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g02040 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g04949 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g19241 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01009244001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01011157001 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_23976 | ESP4 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_24672 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os01g49940.1 | LOC_Os01g49940 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os07g49320.1 | ESP4, LOC_Os07g49320 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g14162 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.07 | OrthoFinder output from all 47 species | |
| Len_g19439 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g06265 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Mp6g03410.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g14027 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g27266 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g22861 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g15043 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0168.g024262 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0240.g026617 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g08972 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17991 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Smo442688 | ESP4 | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g076900.2.1 | Solyc04g076900 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g076910.3.1 | Solyc04g076910 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc09g005330.3.1 | ESP4, Solyc09g005330 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g15317 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g03552 | No alias | component *(Symplekin/Pta1) of Cleavage and... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g06134 | ESP4 | component *(Symplekin/Pta1) of Cleavage and... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e020082_P004 | Zm00001e020082 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e035946_P001 | ESP4, Zm00001e035946 | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | HCCA |
| BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
| BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | HCCA |
| BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009250 | glucan biosynthetic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0031369 | translation initiation factor binding | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
| BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0051273 | beta-glucan metabolic process | IEP | HCCA |
| BP | GO:0051274 | beta-glucan biosynthetic process | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0098797 | plasma membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |