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  5. MA_104182g0010

MA_104182g0010 (U1-70K, U1SNRNP)


Aliases : U1-70K, U1SNRNP

Description : component U1-70K of U1 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_104182g0010

Target Alias Description ECC score Gene Family Method Actions
Als_g10647 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.06 OrthoFinder output from all 47 species
Aop_g04623 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.27 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Dcu_g24491 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01018981001 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Gb_32834 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os10g02630.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species
Spa_g56473 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e012949_P002 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 41 129
IPR000504 RRM_dom 140 214
No external refs found!