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  5. Pp3c20_22240V3.1

Pp3c20_22240V3.1 (Pp3c20_22240)


Aliases : Pp3c20_22240

Description : disease resistance protein (TIR-NBS-LRR class)


Gene families : OG0011264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c20_22240V3.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_19140V3.1 Pp3c10_19140 disease resistance protein (TIR-NBS-LRR class) 0.01 OrthoFinder output from all 47 species
Pp3c10_20780V3.1 Pp3c10_20780 disease resistance protein (TIR-NBS-LRR class) 0.02 OrthoFinder output from all 47 species
Pp3c18_22320V3.1 RPP4, Pp3c18_22320 disease resistance protein (TIR-NBS-LRR class) 0.05 OrthoFinder output from all 47 species
Pp3c18_3160V3.1 Pp3c18_3160 No annotation 0.05 OrthoFinder output from all 47 species
Pp3c20_23190V3.1 Pp3c20_23190 disease resistance protein (TIR-NBS-LRR class) 0.05 OrthoFinder output from all 47 species
Pp3c21_3520V3.1 Pp3c21_3520 target of AVRB operation1 0.04 OrthoFinder output from all 47 species
Pp3c23_7327V3.1 Pp3c23_7327 Disease resistance protein (TIR-NBS-LRR class) family 0.04 OrthoFinder output from all 47 species
Pp3c25_1370V3.1 Pp3c25_1370 disease resistance protein (TIR-NBS-LRR class) 0.05 OrthoFinder output from all 47 species
Pp3c2_17170V3.1 Pp3c2_17170 disease resistance protein (TIR-NBS-LRR class) 0.05 OrthoFinder output from all 47 species
Pp3c2_24770V3.1 Pp3c2_24770 disease resistance protein (TIR-NBS-LRR class) 0.03 OrthoFinder output from all 47 species
Pp3c2_2580V3.1 Pp3c2_2580 disease resistance protein (TIR-NBS-LRR class) 0.02 OrthoFinder output from all 47 species
Pp3c2_2600V3.1 Pp3c2_2600 No annotation 0.05 OrthoFinder output from all 47 species
Sam_g11354 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!