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  5. Pp3c19_18640V3.1

Pp3c19_18640V3.1 (AtGH9B13, GH9B13, Pp3c19_18640)


Aliases : AtGH9B13, GH9B13, Pp3c19_18640

Description : glycosyl hydrolase 9B8


Gene families : OG0000240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_18640V3.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g27809 AtGH9C3, GH9C3 class-C endo-1,4-beta-glucanase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene23390.t1 AtGH9A4, GH9A4,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43497.t2 ATCEL2, CEL2,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene69642.t1 GH9B14,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene71907.t1 AtGH9C3, GH9C3,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0003.g007923 AtGH9B8, GH9B8 not classified & original description: CDS=1-1518 0.01 OrthoFinder output from all 47 species
Azfi_s0116.g046364 GH9C2, AtGH9C2 not classified & original description: CDS=59-1690 0.02 OrthoFinder output from all 47 species
Azfi_s0383.g067439 AtGH9C3, GH9C3 class-C endo-1,4-beta-glucanase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g15980 AtGH9B5, GH9B5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g10899 AtGH9A4, GH9A4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g26990 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g18906 GH9C2, AtGH9C2 class-C endo-1,4-beta-glucanase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56121 GH9C2, AtGH9C2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Mp8g00020.1 GH9B14, AtGH9B14 Endoglucanase OS=Phaseolus vulgaris (sp|p22503|gun_phavu : 457.0) 0.02 OrthoFinder output from all 47 species
Nbi_g27357 AtGH9B5, GH9B5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000772 AtGH9C3, GH9C3 class-C endo-1,4-beta-glucanase & original description:... 0.01 OrthoFinder output from all 47 species
Smo234337 ATCEL2, CEL2 Endoglucanase 3 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Zm00001e026066_P002 AtGH9C3, GH9C3,... Endoglucanase 2 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 47 539
No external refs found!