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  5. Pp3c10_11520V3.1

Pp3c10_11520V3.1 (NRPC1, Pp3c10_11520)


Aliases : NRPC1, Pp3c10_11520

Description : nuclear RNA polymerase A1


Gene families : OG0013869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013869_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_11520V3.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Pp3c11_17080V3.1 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.02 OrthoFinder output from all 47 species
Pp3c2_30110V3.1 Pp3c2_30110 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c3_29710V3.1 NRPC1, Pp3c3_29710 RNA polymerase II large subunit 0.03 OrthoFinder output from all 47 species
Pp3c3_35870V3.1 CRK8, Pp3c3_35870 nuclear RNA polymerase C1 0.04 OrthoFinder output from all 47 species
Pp3c4_14790V3.1 NRPC1, Pp3c4_14790 nuclear RNA polymerase C1 0.03 OrthoFinder output from all 47 species
Pp3c9_12661V3.1 RNA_POL_II_LSRNA_... nuclear RNA polymerase A1 0.02 OrthoFinder output from all 47 species
Pp3c9_12713V3.1 NRPC1, Pp3c9_12713 nuclear RNA polymerase A1 0.04 OrthoFinder output from all 47 species
Pp3c9_17770V3.1 NRPC1, Pp3c9_17770 nuclear RNA polymerase C1 0.04 OrthoFinder output from all 47 species
Pp3c9_17780V3.1 NRPC1, Pp3c9_17780 nuclear RNA polymerase C1 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 13 330
No external refs found!