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  5. MpVg00250.1

MpVg00250.1 (ATSRL1)


Aliases : ATSRL1

Description : No annotation


Gene families : OG0003543 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003543_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MpVg00250.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00011550 ATSRL1,... Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G37370 ATSRL1 PRP38 family protein 0.05 OrthoFinder output from all 47 species
Ala_g04795 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07227 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32915 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.50 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre03.g178300 ATSRL1 Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g07436 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_07116 ATSRL1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g21402 ATSRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025788 ATSRL1 not classified & original description: CDS=295-1590 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 12 147
No external refs found!