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  5. Mp7g16820.1

Mp7g16820.1


Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g16820.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00018630 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
AT4G21660 No alias proline-rich spliceosome-associated (PSP) family protein 0.03 OrthoFinder output from all 47 species
Adi_g065966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23643 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Als_g17641 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aob_g04313 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Ceric.30G024400.1 Ceric.30G024400 component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Dde_g06213 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g17357 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01002655001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os02g58090.1 LOC_Os02g58090 component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Lfl_g38051 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Msp_g32567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ore_g43719 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Ppi_g03891 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Smo232603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Solyc02g078610.4.1 Solyc02g078610 component SF3B2 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Solyc03g006520.3.1 Solyc03g006520 component SF3B2 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Spa_g09832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56443 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e013359_P002 Zm00001e013359 component SF3B2 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007180 DUF382 192 317
IPR006568 PSP_pro-rich 326 371
No external refs found!