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  5. Mp7g12840.1

Mp7g12840.1


Description : E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana (sp|q9ffb6|zfp34_arath : 338.0)


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g12840.1

Target Alias Description ECC score Gene Family Method Actions
Dde_g14021 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g03230 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005534 galactose binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0048029 monosaccharide binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR039512 RCHY1_zinc-ribbon 278 336
IPR008913 Znf_CHY 95 176
IPR001841 Znf_RING 230 273
No external refs found!