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  5. Mp7g11930.1

Mp7g11930.1


Description : DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica (sp|q0db53|rh52a_orysj : 319.0)


Gene families : OG0007895 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007895_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g11930.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Aop_g04365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_40721 No alias DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Lfl_g09541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g10370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 354 472
IPR011545 DEAD/DEAH_box_helicase_dom 148 319
No external refs found!