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  5. Mp3g21320.1

Mp3g21320.1 (EMB2754)


Aliases : EMB2754

Description : HOPS-specific component VPS39 of HOPS/CORVET membrane tethering complexes


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g21320.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT4G36630 EMB2754 Vacuolar sorting protein 39 0.04 OrthoFinder output from all 47 species
Adi_g057736 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Ceric.17G019800.1 EMB2754, Ceric.17G019800 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.13 EMB2754 No description available 0.02 OrthoFinder output from all 47 species
Cre06.g278124 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g14530 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Dcu_g39227 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
GSVIVT01018960001 EMB2754 Vesicle trafficking.target membrane... 0.05 OrthoFinder output from all 47 species
Pir_g11388 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Pnu_g06696 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Ppi_g02390 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.01 OrthoFinder output from all 47 species
Smo149115 EMB2754 Vesicle trafficking.target membrane... 0.02 OrthoFinder output from all 47 species
Tin_g05644 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001180 CNH_dom 74 280
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 507 617
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 897 1004
IPR000547 Clathrin_H-chain/VPS_repeat 632 769
No external refs found!