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  5. Mp1g21650.1

Mp1g21650.1


Description : Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 232.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g21650.1

Target Alias Description ECC score Gene Family Method Actions
AT1G20300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037813 No alias not classified & original description: CDS=1-1092 0.02 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.22G081200.1 Ceric.22G081200 not classified & original description: pacid=50614086... 0.02 OrthoFinder output from all 47 species
Dac_g15992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04814 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_27355 No alias Pentatricopeptide repeat-containing protein At5g11310,... 0.02 OrthoFinder output from all 47 species
LOC_Os04g55090.1 LOC_Os04g55090 Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g21918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.02 OrthoFinder output from all 47 species
Solyc07g025250.3.1 Solyc07g025250 Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004057 arginyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0016598 protein arginylation IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 337 390
IPR002885 Pentatricopeptide_repeat 411 439
IPR002885 Pentatricopeptide_repeat 447 493
IPR002885 Pentatricopeptide_repeat 656 699
IPR002885 Pentatricopeptide_repeat 723 772
IPR002885 Pentatricopeptide_repeat 516 565
No external refs found!