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  5. Mp1g13170.1

Mp1g13170.1 (RPOB)


Aliases : RPOB

Description : DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha (sp|p06272|rpob_marpo : 176.0)


Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g13170.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00108130 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.05 OrthoFinder output from all 47 species
AMTR_s00145p00090170 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
AMTR_s00626p00011520 RPOB,... DNA-directed RNA polymerase subunit beta OS=Morus indica 0.05 OrthoFinder output from all 47 species
AMTR_s01499p00009870 RPOB,... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.03 OrthoFinder output from all 47 species
ATCG00190 RPOB RNA polymerase subunit beta 0.06 OrthoFinder output from all 47 species
Aev_g18557 RPOB core component *(RpoB) of plastid-encoded RNA polymerase... 0.1 OrthoFinder output from all 47 species
Ceric.02G012900.1 RPOB, Ceric.02G012900 not classified & original description: pacid=50585256... 0.02 OrthoFinder output from all 47 species
Ceric.33G023100.1 RPOB, Ceric.33G023100 not classified & original description: pacid=50607182... 0.07 OrthoFinder output from all 47 species
Ceric.38G009900.1 RPOB, Ceric.38G009900 not classified & original description: pacid=50579505... 0.11 OrthoFinder output from all 47 species
GSVIVT01035251001 RPOB DNA-directed RNA polymerase subunit beta OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Gb_02251 RPOB RpoB core component plastid-encoded RNA polymerase 0.09 OrthoFinder output from all 47 species
Gb_06830 RPOB DNA-directed RNA polymerase subunit beta OS=Pinus... 0.08 OrthoFinder output from all 47 species
Gb_09029 RPOB DNA-directed RNA polymerase subunit beta OS=Cycas... 0.04 OrthoFinder output from all 47 species
Gb_09771 RPOB DNA-directed RNA polymerase subunit beta OS=Pinus... 0.02 OrthoFinder output from all 47 species
LOC_Os04g16820.1 RPOB, LOC_Os04g16820 RpoB core component plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
LOC_Os05g22830.1 RPOB, LOC_Os05g22830 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
LOC_Os05g22860.1 RPOB, LOC_Os05g22860 DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Nbi_g14004 RPOB core component *(RpoB) of plastid-encoded RNA polymerase... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472 RPOB not classified & original description: CDS=1-1728 0.03 OrthoFinder output from all 47 species
Smo139200 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha 0.02 OrthoFinder output from all 47 species
Smo236845 RPOB RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Smo237022 RPOB RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Smo237023 RPOB RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Solyc00g500053.1.1 RPOB, Solyc00g500053 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Solyc01g095950.1.1 RPOB, Solyc01g095950 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc02g067590.2.1 RPOB, Solyc02g067590 DNA-directed RNA polymerase subunit beta OS=Liriodendron... 0.04 OrthoFinder output from all 47 species
Solyc08g028750.1.1 Solyc08g028750 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g017920.1.1 RPOB, Solyc10g017920 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 OrthoFinder output from all 47 species
Solyc12g035870.3.1 RPOB, Solyc12g035870 DNA-directed RNA polymerase subunit beta OS=Solanum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004097 catechol oxidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!