Mp1g07340.1 (ATCUL4, CUL4)

Aliases : ATCUL4, CUL4

Description : scaffold component CUL4 of CUL4-DDB1 ubiquitination complexes. scaffold component (CUL4) of CUL4-DDB1 ubiquitination complex

Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g07340.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g058112	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Aev_g15218	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.01	OrthoFinder output from all 47 species
Ala_g02559	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Aop_g07404	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.01	OrthoFinder output from all 47 species
Azfi_s0005.g009117	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Cba_g14747	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000157.110	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g13417	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.05	OrthoFinder output from all 47 species
Ehy_g02848	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
GSVIVT01020008001	ATCUL3A, ATCUL3,...	Cullin-3A OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01021502001	ATCUL4, CUL4	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
LOC_Os03g57290.1	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Len_g07971	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Len_g08803	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.03	OrthoFinder output from all 47 species
Lfl_g02234	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species
MA_10436569g0010	ATCUL3A, ATCUL3,...	Cullin-3A OS=Arabidopsis thaliana (sp\|q9zvh4\|cul3a_arath : 422.0)	0.02	OrthoFinder output from all 47 species
MA_779048g0010	ATCUL4, CUL4	Cullin-4 OS=Arabidopsis thaliana (sp\|q8lgh4\|cul4_arath : 450.0)	0.02	OrthoFinder output from all 47 species
Nbi_g01200	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Ore_g17472	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.02	OrthoFinder output from all 47 species
Ppi_g03162	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sam_g09683	No alias	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Sam_g13649	No alias	scaffold component *(CUL4) of CUL4-DDB1 ubiquitination...	0.01	OrthoFinder output from all 47 species
Smo172620	ATCUL4, CUL4	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Solyc01g010820.3.1	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.02	OrthoFinder output from all 47 species
Solyc02g087900.3.1	ATCUL3A, ATCUL3,...	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.02	OrthoFinder output from all 47 species
Tin_g01191	ATCUL4, CUL4	scaffold component *(CUL4) of CUL4-DDB1 ubiquiTination...	0.04	OrthoFinder output from all 47 species
Tin_g02089	ATCUL3A, ATCUL3,...	scaffold component *(CUL3) of CUL3-BTB E3 ligase...	0.02	OrthoFinder output from all 47 species
Zm00001e005919_P001	ATCUL4, CUL4,...	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	115	712
IPR019559	Cullin_neddylation_domain	743	802

External Links

No external refs found!

Mp1g07340.1 (ATCUL4, CUL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation