1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e041374_P001

Zm00001e041374_P001 (Zm00001e041374)


Aliases : Zm00001e041374

Description : Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana (sp|b6sfa4|maa3_arath : 193.0)


Gene families : OG0001121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001121_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041374_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT5G37030 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT5G37140 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G37165 No alias No description available 0.04 OrthoFinder output from all 47 species
Ceric.02G080200.1 Ceric.02G080200 not classified & original description: pacid=50585102... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000198.1 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.60 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.76 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g30232 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39815 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g44434 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os02g45910.1 LOC_Os02g45910 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g49270.1 LOC_Os04g49270 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g49310.1 LOC_Os04g49310 Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os04g51090.1 LOC_Os04g51090 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 41 121
IPR041677 DNA2/NAM7_AAA_11 383 474
IPR041679 DNA2/NAM7-like_C 482 678
No external refs found!