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  5. Zm00001e039503_P002

Zm00001e039503_P002 (EMB1968, RFC4, Zm00001e039503)


Aliases : EMB1968, RFC4, Zm00001e039503

Description : component RFC4 of PCNA sliding clamp loader complex


Gene families : OG0006776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039503_P002

Target Alias Description ECC score Gene Family Method Actions
AT1G21690 EMB1968, RFC4 ATPase family associated with various cellular activities (AAA) 0.03 OrthoFinder output from all 47 species
Adi_g045841 EMB1968, RFC4 component *(RFC4) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.12 EMB1968, RFC4 Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
Cre06.g251800 EMB1968, RFC4 Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01008825001 EMB1968, RFC4 Cell cycle.interphase.DNA... 0.03 OrthoFinder output from all 47 species
Gb_29235 EMB1968, RFC4 Replication factor C subunit 2 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Len_g00454 EMB1968, RFC4 component *(RFC4) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
MA_540763g0010 EMB1968, RFC4 component RFC4 of PCNA sliding clamp loader complex 0.05 OrthoFinder output from all 47 species
Mp1g11310.1 EMB1968, RFC4 component RFC4 of PCNA sliding clamp loader complex 0.04 OrthoFinder output from all 47 species
Msp_g01074 EMB1968, RFC4 component *(RFC4) of PCNA sliding clamp loader complex &... 0.01 OrthoFinder output from all 47 species
Pnu_g08768 EMB1968, RFC4 component *(RFC4) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Sam_g16914 No alias component *(RFC4) of PCNA sliding clamp loader complex &... 0.03 OrthoFinder output from all 47 species
Spa_g09242 EMB1968, RFC4 component *(RFC4) of PCNA sliding clamp loader complex &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013748 Rep_factorC_C 239 281
IPR003959 ATPase_AAA_core 45 171
No external refs found!