Zm00001e035873_P003 (MED34, ATRECQ2,...)

Aliases : MED34, ATRECQ2, RECQL2, Zm00001e035873

Description : ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana (sp|q9ft70|rql4b_arath : 298.0)

Gene families : OG0007173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007173_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e035873_P003
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00186260	ATRECQ4A,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Aop_g69305	ATRECQ4A, ATSGS1, RECQ4A	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.18G010900.1	MED34, ATRECQ2,...	not classified & original description: pacid=50621519...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.28	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre12.g490150	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Ehy_g18168	MED34, ATRECQ2, RECQL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g48360.1	MED34, ATRECQ2,...	Mediator of RNA polymerase II transcription subunit 34...	0.05	OrthoFinder output from all 47 species
MA_10427638g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_10429752g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g02390.1	MED34, ATRECQ2, RECQL2	Mediator of RNA polymerase II transcription subunit 34...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014366	MED34, ATRECQ2, RECQL2	not classified & original description: CDS=173-2734	0.02	OrthoFinder output from all 47 species
Sam_g16336	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	16	175
IPR032284	RecQ_Zn-bd	335	395
IPR029491	Helicase_HTH	686	782
IPR018982	RQC_domain	400	471
IPR002121	HRDC_dom	572	636
IPR001650	Helicase_C	217	322

External Links

No external refs found!

Zm00001e035873_P003 (MED34, ATRECQ2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation