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  5. Zm00001e033498_P001

Zm00001e033498_P001 (CYCD3;3, Zm00001e033498)


Aliases : CYCD3;3, Zm00001e033498

Description : cyclin (CYCD)


Gene families : OG0000395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033498_P001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00148150 CYCD1;1,... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
AMTR_s00072p00074880 CYCD6;1,... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
AMTR_s00135p00066200 ATCYCD2;1,... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
AMTR_s00190p00017930 ATCYCD2;1,... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 OrthoFinder output from all 47 species
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.05 OrthoFinder output from all 47 species
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.07 OrthoFinder output from all 47 species
AT4G37630 CYCD5;1 cyclin d5;1 0.04 OrthoFinder output from all 47 species
AT5G67260 CYCD3;2 CYCLIN D3;2 0.08 OrthoFinder output from all 47 species
Aev_g01039 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aev_g09917 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ala_g15264 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g20231 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ala_g20505 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g22032 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Als_g01667 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Als_g03626 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Als_g11704 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Als_g12082 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Als_g13442 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Als_g19978 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Als_g47164 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Aop_g31334 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g68494 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene22554.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene39255.t1 ATCYCD2;1,... regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene67685.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70970.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72259.t1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0019.g015178 CYCD4;2 not classified & original description: CDS=139-672 0.03 OrthoFinder output from all 47 species
Cba_g03303 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Cba_g16891 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Cba_g16892 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G090200.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ceric.09G017400.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Ceric.10G062700.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G016800.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ceric.14G055100.1 CYCD3;3, Ceric.14G055100 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z120100.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Ceric.31G027000.1 CYCD3;3, Ceric.31G027000 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ceric.32G006300.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ceric.35G003500.1 CYCD1;1,... regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G055700.1 CYCD3, CYCD3;1,... regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Dac_g16428 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Dcu_g03868 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Dcu_g07032 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Dcu_g18290 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07454 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08150 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01000226001 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
GSVIVT01000451001 CYCD6;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 OrthoFinder output from all 47 species
GSVIVT01003175001 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 OrthoFinder output from all 47 species
GSVIVT01009432001 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.05 OrthoFinder output from all 47 species
GSVIVT01020167001 CYCD1;1, ATCYCD1;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 OrthoFinder output from all 47 species
GSVIVT01037810001 CYCD1;1, ATCYCD1;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.05 OrthoFinder output from all 47 species
Gb_03361 CYCD3, CYCD3;1 cyclin (CYCD) 0.05 OrthoFinder output from all 47 species
Gb_34092 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
LOC_Os03g10650.1 CYCD5;1, LOC_Os03g10650 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
LOC_Os03g42070.1 CYCD5;1, LOC_Os03g42070 cyclin (CYCD) 0.1 OrthoFinder output from all 47 species
LOC_Os07g37010.1 CYCD6;1, LOC_Os07g37010 cyclin (CYCD) 0.1 OrthoFinder output from all 47 species
LOC_Os09g02360.1 CYCD3;3, LOC_Os09g02360 cyclin (CYCD) 0.14 OrthoFinder output from all 47 species
LOC_Os09g21450.1 CYCD1;1,... cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
LOC_Os11g47950.1 CYCD3, CYCD3;1,... cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
LOC_Os12g39830.1 CYCD5;1, LOC_Os12g39830 cyclin (CYCD) 0.07 OrthoFinder output from all 47 species
Len_g00488 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Len_g03800 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Len_g20357 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.01 OrthoFinder output from all 47 species
Lfl_g09649 CYCD4;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Lfl_g10565 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
MA_10429174g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10429174g0030 CYCD3, CYCD3;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
MA_114375g0010 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.06 OrthoFinder output from all 47 species
MA_173888g0010 CYCD3, CYCD3;1 cyclin (CYCD) 0.01 OrthoFinder output from all 47 species
MA_182921g0010 CYCD3, CYCD3;1 cyclin (CYCD) 0.01 OrthoFinder output from all 47 species
MA_93221g0010 CYCD1;1, ATCYCD1;1 cyclin (CYCD) 0.07 OrthoFinder output from all 47 species
Mp8g17230.1 ATCYCD2;1, CYCD2;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
Msp_g02755 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Msp_g06529 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Msp_g08856 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Msp_g10139 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Nbi_g01101 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Nbi_g43541 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ore_g36210 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Pnu_g29651 ATCYCD2;1, CYCD2;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g04462 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g06303 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ppi_g10385 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ppi_g14272 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014839 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020437 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020872 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025534 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sam_g16646 No alias regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Smo15078 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
Smo412774 CYCD1;1, ATCYCD1;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
Solyc01g107730.3.1 CYCD3, CYCD3;1,... cyclin (CYCD) 0.01 OrthoFinder output from all 47 species
Solyc02g079370.3.1 CYCD6;1, Solyc02g079370 cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
Solyc02g092980.3.1 CYCD3;2, Solyc02g092980 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Solyc04g078470.3.1 CYCD3;3, Solyc04g078470 cyclin (CYCD) 0.05 OrthoFinder output from all 47 species
Solyc05g006050.3.1 CYCD1;1,... cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Solyc07g054950.2.1 CYCD6;1, Solyc07g054950 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Solyc12g088650.2.1 CYCD3;3, Solyc12g088650 cyclin (CYCD) 0.04 OrthoFinder output from all 47 species
Spa_g04266 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g04498 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g11128 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g15040 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Spa_g15041 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g25368 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Spa_g28868 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g38227 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g47878 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Tin_g00808 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Tin_g06567 CYCD1;1, ATCYCD1;1 regulatory protein *(CYCD) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Tin_g46147 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Zm00001e018000_P001 CYCD1;1,... cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
Zm00001e034405_P005 ATCYCD2;1,... cyclin (CYCD) 0.03 OrthoFinder output from all 47 species
Zm00001e035215_P001 CYCD6;1, Zm00001e035215 cyclin (CYCD) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006671 Cyclin_N 79 189
No external refs found!