Aliases : YAB2, Zm00001e032845
Description : transcription factor (YABBY)
Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e032845_P002 | |
Cluster | HCCA: Cluster_17 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00004p00165390 | YAB2,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00047p00199030 | CRC,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.07 | OrthoFinder output from all 47 species | |
AMTR_s00078p00029420 | YAB5,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00085p00032940 | AFO, YAB1, FIL,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00096p00054100 | YAB5,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.04 | OrthoFinder output from all 47 species | |
AT1G23420 | INO | Plant-specific transcription factor YABBY family protein | 0.05 | OrthoFinder output from all 47 species | |
AT1G69180 | CRC | Plant-specific transcription factor YABBY family protein | 0.02 | OrthoFinder output from all 47 species | |
AT2G26580 | YAB5 | plant-specific transcription factor YABBY family protein | 0.02 | OrthoFinder output from all 47 species | |
AT2G45190 | AFO, YAB1, FIL | Plant-specific transcription factor YABBY family protein | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01012246001 | CRC | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01022586001 | YAB2 | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g11600.1 | CRC, LOC_Os03g11600 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g45330.1 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os07g06620.2 | YAB2, LOC_Os07g06620 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os10g36420.1 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os12g42610.1 | YAB5, LOC_Os12g42610 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
MA_407206g0010 | YAB5 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g010240.3.1 | CRC, Solyc01g010240 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g091010.3.1 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
Solyc05g005240.2.1 | INO, Solyc05g005240 | transcription factor (YABBY) | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g073920.3.1 | YAB2, Solyc06g073920 | transcription factor (YABBY) | 0.07 | OrthoFinder output from all 47 species | |
Solyc07g008180.4.1 | YAB5, Solyc07g008180 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
Solyc08g079100.3.1 | AFO, YAB1, FIL,... | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g071810.2.1 | YAB2, Solyc11g071810 | transcription factor (YABBY) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0007275 | multicellular organism development | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0006631 | fatty acid metabolic process | IEP | HCCA |
BP | GO:0006633 | fatty acid biosynthetic process | IEP | HCCA |
BP | GO:0008272 | sulfate transport | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | HCCA |
MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | HCCA |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
MF | GO:0015297 | antiporter activity | IEP | HCCA |
BP | GO:0015698 | inorganic anion transport | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0072348 | sulfur compound transport | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006780 | YABBY | 6 | 123 |
No external refs found! |