Zm00001e030798_P003 (HON4, Zm00001e030798)

Aliases : HON4, Zm00001e030798

Description : no hits & (original description: none)

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030798_P003

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.05	OrthoFinder output from all 47 species
Adi_g029498	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03738	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g35464	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Gb_40199	HIS1-3	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Ore_g36914	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g066100.3.1	Solyc09g066100	linker histone (H1)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	19	81
IPR017956	AT_hook_DNA-bd_motif	409	418
IPR017956	AT_hook_DNA-bd_motif	109	120
IPR017956	AT_hook_DNA-bd_motif	352	361
IPR017956	AT_hook_DNA-bd_motif	239	249
IPR017956	AT_hook_DNA-bd_motif	490	499
IPR017956	AT_hook_DNA-bd_motif	134	145
IPR017956	AT_hook_DNA-bd_motif	172	182
IPR017956	AT_hook_DNA-bd_motif	516	527
IPR017956	AT_hook_DNA-bd_motif	321	331
IPR017956	AT_hook_DNA-bd_motif	431	440

External Links

No external refs found!

Zm00001e030798_P003 (HON4, Zm00001e030798)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation