- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : Zm00001e029531
Description : no hits & (original description: none)
Gene families : OG0003319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003319_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e029531_P001 | |
| Cluster | HCCA: Cluster_129 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g13296 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g04319 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g43563 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene38477.t1 | Aspi01Gene38477 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0093.g043207 | No alias | not classified & original description: CDS=3-608 | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.30G066600.1 | Ceric.30G066600 | not classified & original description: pacid=50608316... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g04326 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g02990.2 | LOC_Os05g02990 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Mp8g05730.1 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g05610 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g55627 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
| MF | GO:0098599 | palmitoyl hydrolase activity | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR009606 | DEAL/Modifying_wall_lignin1/2 | 61 | 155 |
| No external refs found! |