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  5. Zm00001e028275_P001

Zm00001e028275_P001 (Zm00001e028275)


Aliases : Zm00001e028275

Description : plastidial UMP kinase (PUMPKIN)


Gene families : OG0002976 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002976_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028275_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00142190 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT3G18680 No alias Amino acid kinase family protein 0.11 OrthoFinder output from all 47 species
Adi_g020928 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10229 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g00702 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g42828 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0368.g067054 No alias plastidial UMP kinase *(PUMPKIN) & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g23859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_22058 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g58569 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33033 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.03 OrthoFinder output from all 47 species
MA_245601g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g26229 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51044 No alias plastidial UMP kinase *(PUMPKIN) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007442 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo130301 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g078080.4.1 Solyc03g078080 plastidial UMP kinase (PUMPKIN) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001048 Asp/Glu/Uridylate_kinase 92 302
No external refs found!