Sequence Description Alias PCC hrr Zm00001e015566_P003 OTP51 plastidial RNA splicing factor OTP51, Zm00001e015566 0.84643395162657 1 Zm00001e000423_P001 rRNA pseudouridine synthase (RsuA) SVR1, Zm00001e000423 0.8143030365572796 45 Zm00001e037912_P001 PAP11/MURE cofactor of plastid-encoded RNA polymerase MURE, PDE316, ATMURE, Zm00001e037912 0.8139556222542668 21 Zm00001e032499_P001 no hits & (original description: none) Zm00001e032499 0.8094239341299042 6 Zm00001e029916_P001 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica (sp|q5vry0|rh39_orysj : 793.0) RH39, Zm00001e029916 0.8048688145564874 33 Zm00001e021412_P001 FSD2-interacting component of plastid-encoded RNA polymerase Zm00001e021412 0.8025993977667482 15 Zm00001e024057_P001 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana (sp|q8w4i6|bpg2_arath : 551.0) Zm00001e024057 0.7982877963676721 11 Zm00001e019479_P001 Probable S-sulfocysteine synthase, chloroplastic OS=Arabidopsis thaliana (sp|o22682|cysk4_arath : 412.0) & Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group(50.2.5 : 403.3) CS26, Zm00001e019479 0.7944091842119597 10 Zm00001e023883_P001 Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays (sp|a7ln87|ppr5_maize : 900.0) EMB2453, ATPPR5, Zm00001e023883 0.7941374194518277 74 Zm00001e017288_P001 non-proteolytic core component ClpR of chloroplast Clp-type protease complex CLPR4, Zm00001e017288 0.7932597003293264 47 Zm00001e023510_P001 no hits & (original description: none) Zm00001e023510 0.7875387242054596 57 Zm00001e021762_P003 co-chaperone (Hsp40) Zm00001e021762 0.7863536659373199 93 Zm00001e001632_P001 no hits & (original description: none) Zm00001e001632 0.7859507749998204 70 Zm00001e027106_P001 transcription factor (mTERF). mTERF4 plastidial RNA splicing factor Zm00001e027106 0.783717990172506 16 Zm00001e028874_P001 RNA editing factor (OZ-type) VAR3, Zm00001e028874 0.7834864293780129 17 Zm00001e030166_P001 dual-specificity tRNA/rRNA pseudouridine synthase (RluA) Zm00001e030166 0.7747903725448247 18 Zm00001e034445_P001 Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana (sp|q9fi80|pp425_arath : 429.0) LPA66, Zm00001e034445 0.7724166632369399 19 Zm00001e017000_P001 myosin adaptor protein (MadB) Phox2, Zm00001e017000 0.771745387222291 20 Zm00001e013613_P005 no hits & (original description: none) Zm00001e013613 0.7707417055774239 21 Zm00001e041749_P001 DNA polymerase (POP) POLGAMMA2, Zm00001e041749 0.769610727210144 22 Zm00001e019266_P002 PAP6/FLN1 cofactor of plastid-encoded RNA polymerase FLN1, Zm00001e019266 0.7674311953485199 31 Zm00001e004314_P001 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 808.0) MEE40, Zm00001e004314 0.7661803593519152 30 Zm00001e041364_P001 no hits & (original description: none) Zm00001e041364 0.766037036564097 65 Zm00001e017789_P001 Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana (sp|q9fgp9|rer1_arath : 99.0) Zm00001e017789 0.7658351628202177 31 Zm00001e019106_P003 plastidial exonuclease Zm00001e019106 0.7653534787486073 67 Zm00001e028549_P001 PAP3/TAC10 cofactor of plastid-encoded RNA polymerase PTAC10, PDE312, Zm00001e028549 0.7640597893749572 72 Zm00001e016877_P001 aspartate-tRNA ligase Zm00001e016877 0.7626444287562827 88 Zm00001e004121_P001 no hits & (original description: none) Zm00001e004121 0.7608989033189715 31 Zm00001e036663_P001 iron superoxide dismutase FSD2, Zm00001e036663 0.7607149416115729 66 Zm00001e038326_P005 proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex NCLPP1, CLPP5, NCLPP5, Zm00001e038326 0.7606453085680185 33 Zm00001e031603_P002 plastidial ribosome biogenesis factor (PAC) PAC, Zm00001e031603 0.7591511457983406 34 Zm00001e032771_P001 transcription factor (mTERF) EMB2219, Zm00001e032771 0.756864188689093 69 Zm00001e033939_P001 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays (sp|a7xn92|cfm3_maize : 529.0) Zm00001e033939 0.7568537214859667 36 Zm00001e025070_P003 exo-/endoribonuclease (RNase J) emb2746, Zm00001e025070 0.7532188719475028 37 Zm00001e018529_P001 M18-class aspartyl aminopeptidase (DAP) Zm00001e018529 0.7532152443076062 38 Zm00001e004869_P001 Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana (sp|q3edf8|ppr28_arath : 360.0) Zm00001e004869 0.7523084306383573 40 Zm00001e011467_P004 Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana (sp|q9ffn1|pp363_arath : 684.0) emb1899, EMB175, EMB166, Zm00001e011467 0.7521663046086295 57 Zm00001e010909_P002 RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica (sp|a3bn26|pus6_orysj : 80.5) Zm00001e010909 0.7506436574759636 42 Zm00001e019697_P001 PAP5/TAC12 cofactor of plastid-encoded RNA polymerase. transcriptional coactivator (HEMERA) PTAC12, HMR, Zm00001e019697 0.7469549442028903 88 Zm00001e029079_P001 no hits & (original description: none) Zm00001e029079 0.7459787986592973 46 Zm00001e002511_P002 proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex NCLPP4, CLPP4, Zm00001e002511 0.7447450902418242 94 Zm00001e040293_P001 RNA editing factor (MORF) Zm00001e040293 0.7407749326030805 99 Zm00001e031351_P001 RNA editing factor (ECD1) EMB2261, Zm00001e031351 0.7405067627827148 51 Zm00001e035434_P001 plastidial mRNA processing factor (PPR10) Zm00001e035434 0.7403703214727217 52 Zm00001e029743_P002 component Toc90|Toc120|Toc132|Toc159 of outer envelope TOC translocation system PPI2, ATTOC159, TOC159, TOC160, TOC86, Zm00001e029743 0.7394712938470063 53 Zm00001e038655_P001 GTP-binding protein At2g22870 OS=Arabidopsis thaliana (sp|o81004|y2287_arath : 377.0) EMB2001, Zm00001e038655 0.7381177753651331 54 Zm00001e026570_P001 WTF1 plastidial RNA basal splicing factor WTF1, AtWTF1, Zm00001e026570 0.7306926807502674 61 Zm00001e037650_P001 nuclear-encoded organellar RNA polymerase (NEP) PDE319, SCA3, Zm00001e037650 0.7298491557351822 62 Zm00001e002552_P001 RNA editing factor (SEL1/PDM1) Zm00001e002552 0.7295044981015205 63 Zm00001e004642_P001 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase PTAC3, Zm00001e004642 0.7279774105943398 64 Zm00001e034031_P002 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica (sp|q6h601|rh22_orysj : 854.0) Zm00001e034031 0.7275826408942282 65 Zm00001e025796_P002 Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana (sp|q8w487|yb95_arath : 114.0) Zm00001e025796 0.7268391641885684 98 Zm00001e011272_P001 CFM3-type plastidial RNA splicing factor ATCFM3A, CFM3A, Zm00001e011272 0.7260310974073444 68 Zm00001e029672_P001 tRNA pseudouridine synthase (TruB) Zm00001e029672 0.7255047321346224 69 Zm00001e037960_P002 no hits & (original description: none) Zm00001e037960 0.722235107234536 72 Zm00001e034500_P002 endoribonuclease (RNase Z) CPZ, TRZ2, Zm00001e034500 0.7192180230467117 75 Zm00001e001449_P005 proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex NCLPP1, CLPP5, NCLPP5, Zm00001e001449 0.7185317914388637 76 Zm00001e003867_P004 endoribonuclease (RNase E) RNEE/G, Zm00001e003867 0.7177790527169615 78 Zm00001e029825_P001 subunit beta of Cpn60 chaperonin complex. component CPN60b of CPN60 assembly chaperone complex. chaperone (Hsp60) CPN60B, LEN1, Zm00001e029825 0.7157482544857071 91 Zm00001e025247_P003 no hits & (original description: none) Zm00001e025247 0.7154010234132532 85 Zm00001e035782_P001 Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana (sp|q9lpc4|ppr1_arath : 336.0) Zm00001e035782 0.7151587175223906 86 Zm00001e035964_P003 PAP2/TAC2 cofactor of plastid-encoded RNA polymerase PTAC2, Zm00001e035964 0.7149566712927901 88 Zm00001e039649_P001 Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana (sp|q9fgp9|rer1_arath : 95.1) Zm00001e039649 0.7108728519896328 94 Zm00001e009702_P001 bifunctional 5,10-methylene-THF dehydrogenase and 5,10-methenyl-THF cyclohydrolase Zm00001e009702 0.7100601108365868 95 Zm00001e025292_P002 Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana (sp|q9sqk3|em506_arath : 289.0) EMB139, EMB506, Zm00001e025292 0.7097278797839351 96 Zm00001e013900_P001 exo-/endoribonuclease (RNase J) emb2746, Zm00001e013900 0.709523646492057 97