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  5. Zm00001e027845_P004

Zm00001e027845_P004 (LUG, RON2, Zm00001e027845)


Aliases : LUG, RON2, Zm00001e027845

Description : transcriptional co-repressor (LUG)


Gene families : OG0000790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027845_P004
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00094620 LUG, RON2,... RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Adi_g011009 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Adi_g060302 LUG, RON2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105962 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Aev_g10016 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Ala_g09330 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Ala_g12154 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Als_g54967 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Als_g61871 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Aob_g04417 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Aop_g14550 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45685.t2 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Ceric.35G054400.1 LUG, RON2,... component *(LUG/LUH) of transcriptional co-repressor... 0.08 OrthoFinder output from all 47 species
Dcu_g08942 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Dcu_g39318 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Dde_g23584 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Ehy_g08626 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
GSVIVT01015458001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.05 OrthoFinder output from all 47 species
GSVIVT01035791001 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Gb_02946 LUG, RON2 transcriptional co-repressor (LUG) 0.04 OrthoFinder output from all 47 species
LOC_Os01g42260.1 LUG, RON2, LOC_Os01g42260 transcriptional co-repressor (LUG) 0.1 OrthoFinder output from all 47 species
LOC_Os03g64300.1 LUH, LOC_Os03g64300 transcriptional co-repressor (LUG) 0.07 OrthoFinder output from all 47 species
Len_g18018 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Lfl_g07408 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Lfl_g14945 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
MA_10428752g0010 LUG, RON2 transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
MA_34795g0010 LUG, RON2 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
MA_57453g0010 LUH transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
MA_65863g0010 LUH transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species
MA_950191g0010 LUH transcriptional co-repressor (LUG) 0.02 OrthoFinder output from all 47 species
Ore_g06587 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Pir_g64952 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Pnu_g18167 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Pp3c1_3700V3.1 LUG, RON2, Pp3c1_3700 LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 OrthoFinder output from all 47 species
Pp3c2_31650V3.1 LUG, RON2, Pp3c2_31650 LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017924 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Sam_g11604 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.05 OrthoFinder output from all 47 species
Sam_g13678 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.04 OrthoFinder output from all 47 species
Smo410492 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.03 OrthoFinder output from all 47 species
Smo79275 LUG, RON2 RNA biosynthesis.transcriptional repression.LUG... 0.04 OrthoFinder output from all 47 species
Solyc02g078000.2.1 LUH, Solyc02g078000 transcriptional co-repressor (LUG) 0.07 OrthoFinder output from all 47 species
Tin_g29192 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.02 OrthoFinder output from all 47 species
Zm00001e016200_P001 LUH, Zm00001e016200 transcriptional co-repressor (LUG) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 691 727
IPR001680 WD40_repeat 616 640
IPR001680 WD40_repeat 776 811
IPR001680 WD40_repeat 651 683
IPR006594 LisH 10 36
No external refs found!