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  5. Zm00001e027516_P001

Zm00001e027516_P001 (Zm00001e027516)


Aliases : Zm00001e027516

Description : Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana (sp|q8vyr5|pp351_arath : 451.0)


Gene families : OG0005110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027516_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00033890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35850,... 0.05 OrthoFinder output from all 47 species
AT4G35850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 OrthoFinder output from all 47 species
Aop_g01276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14871 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.05G086100.1 Ceric.05G086100 not classified & original description: pacid=50578539... 0.06 OrthoFinder output from all 47 species
Dcu_g11095 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032367001 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.08 OrthoFinder output from all 47 species
Gb_40110 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05320.1 LOC_Os05g05320 Pentatricopeptide repeat-containing protein At4g35850,... 0.08 OrthoFinder output from all 47 species
MA_5480780g0010 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.03 OrthoFinder output from all 47 species
Mp7g04570.1 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.11 OrthoFinder output from all 47 species
Ppi_g02951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006878 No alias not classified & original description: CDS=75-1526 0.02 OrthoFinder output from all 47 species
Smo271393 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
Solyc01g112020.3.1 Solyc01g112020 Pentatricopeptide repeat-containing protein At4g35850,... 0.1 OrthoFinder output from all 47 species
Spa_g11968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 305 323
IPR033443 PPR_long 63 173
No external refs found!